Discovery of Small Molecule Antagonists of the USP5 Zinc Finger Ubiquitin-Binding Domain

J Med Chem. 2019 Nov 27;62(22):10144-10155. doi: 10.1021/acs.jmedchem.9b00988. Epub 2019 Nov 12.

Abstract

USP5 disassembles unanchored polyubiquitin chains to recycle free monoubiquitin, and is one of the 12 ubiquitin specific proteases featuring a zinc finger ubiquitin-binding domain (ZnF-UBD). This distinct structural module has been associated with substrate positioning or allosteric modulation of catalytic activity, but its cellular function remains unclear. We screened a chemical library focused on the ZnF-UBD of USP5, crystallized hits in complex with the protein, and generated a preliminary structure-activity relationship, which enables the development of more potent and selective compounds. This work serves as a framework for the discovery of a chemical probe to delineate the function of USP5 ZnF-UBD in proteasomal degradation and other ubiquitin signaling pathways in health and disease.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Crystallography, X-Ray
  • Dose-Response Relationship, Drug
  • Drug Evaluation, Preclinical / methods
  • Endopeptidases / chemistry
  • Endopeptidases / genetics
  • Endopeptidases / metabolism*
  • Magnetic Resonance Spectroscopy
  • Protease Inhibitors / chemistry*
  • Protease Inhibitors / pharmacology*
  • Protein Domains
  • Small Molecule Libraries / chemistry*
  • Small Molecule Libraries / pharmacology
  • Structure-Activity Relationship
  • Surface Plasmon Resonance
  • Ubiquitin / metabolism*
  • Zinc Fingers

Substances

  • Protease Inhibitors
  • Small Molecule Libraries
  • Ubiquitin
  • Endopeptidases
  • ubiquitin isopeptidase